Stephanie Faye Berry

US Patent:

6519583, Feb 11, 2003

Filed:

Jul 27, 1999

Appl. No.:

09/362649

Inventors:

Alex George Koleszar - Newark CA
Frank D. Russo - Sunnyvale CA
Joe Don Heath - Sunnyvale CA
Stephanie F. Berry - San Jose CA
Rachel J. Wright - Mountain View CA
Peter A Covitz - San Francisco CA
Yvonne R. Boldt - Sunnyvale CA
Lee Crawford - San Francisco CA

Assignee:

Incyte Pharmaceuticals, Inc. - Palo Alto CA

International Classification:

G06F 1730

US Classification:

707 1, 345765, 435 6

Abstract:

Disclosed are methods, media and systems for graphically displaying computer-based biomolecular sequence information. Generally, biomolecular sequence information may be graphically depicted in a variety of different forms in accordance with the present invention. The sequence information may be composed of nucleotide or amino acid sequence information or both. The graphical depictions may be in several different formats providing different information relating to the sequences, and may be displayed in one or more screens of a computer user interface.

US Patent:

6643634, Nov 4, 2003

Filed:

Dec 2, 2002

Appl. No.:

10/309378

Inventors:

Alex George Koleszar - Newark CA
Frank D. Russo - Sunnyvale CA
Joe Don Heath - Sunnyvale CA
Stephanie F. Berry - San Jose CA
Rachel J. Wright - Mountain View CA
Peter A Covitz - San Francisco CA
Yvonne R. Boldt - Sunnyvale CA
Lee Crawford - San Francisco CA

Assignee:

Incyte Genomics, Inc. - Palo Alto CA

International Classification:

G06F 1730

US Classification:

707 1, 345765, 435 6

Abstract:

Disclosed are methods, media and systems for graphically displaying computer-based biomolecular sequence information. Generally, biomolecular sequence information may be graphically depicted in a variety of different forms in accordance with the present invention. The sequence information may be composed of nucleotide or amino acid sequence information or both. The graphical depictions may be in several different formats providing different information relating to the sequences, and may be displayed in one or more screens of a computer user interface.

US Patent:

6742004, May 25, 2004

Filed:

Mar 15, 2002

Appl. No.:

10/100224

Inventors:

Cathryn E. Sabatini - San Jose CA
Joe Don Heath - Sunnyvale CA
Peter A. Covitz - San Francisco CA
Tod M. Klingler - Palo Alto CA
Frank D. Russo - Redwood City CA
Stephanie F. Berry - Fremont CA

Assignee:

Incyte Genomics, Inc. - Palo Alto CA

International Classification:

G06F 1730

US Classification:

7071041, 707 10, 435 6

Abstract:

Disclosed is a relational database system for storing and manipulating biomolecular sequence information, the database including genomic libraries for a plurality of types of organisms, the libraries having multiple genomic sequences, at least some of which represent open reading frames located along a contiguous sequence on each the plurality of organisms genomes, and a user interface capable of receiving a selection of two or more of the genomic libraries for comparison and displaying the results of the comparison. The system also provides a user interface capable of receiving a selection of one or more probe open reading frames for use in determining homologous matches between such probe open reading frame(s) and the open reading frames in the genomic libraries, and displaying the results of the determination.

US Patent:

20040111674, Jun 10, 2004

Filed:

Nov 3, 2003

Appl. No.:

10/700792

Inventors:

Alex Koleszar - Newark CA, US
Frank Russo - Sunnyvale CA, US
Joe Heath - Sunnyvale CA, US
Stephanie Berry - San Jose CA, US
Rachel Wright - Mountain View CA, US
Peter Covitz - San Francisco CA, US
Yvonne Boldt - Sunnyvale CA, US
Lee Crawford - San Francisco CA, US

International Classification:

G06F007/00
G06F017/30

US Classification:

715/513000, 715/517000, 707/001000

Abstract:

Disclosed are methods, media and systems for graphically displaying computer-based biomolecular sequence information. Generally, biomolecular sequence information may be graphically depicted in a variety of different forms in accordance with the present invention. The sequence information may be composed of nucleotide or amino acid sequence information or both. The graphical depictions may be in several different formats providing different information relating to the sequences, and may be displayed in one or more screens of a computer user interface.

US Patent:

59667125, Oct 12, 1999

Filed:

May 15, 1997

Appl. No.:

8/857382

Inventors:

Cathryn E. Sabatini - San Jose CA
Joe Don Heath - Sunnyvale CA
Peter A. Covitz - San Francisco CA
Tod M. Klingler - Palo Alto CA
Frank D. Russo - Redwood City CA
Stephanie F. Berry - Fremont CA

Assignee:

Incyte Pharmaceuticals, Inc. - Palo Alto CA

International Classification:

G06F 1730

US Classification:

707104

Abstract:

Disclosed is a relational database system for storing and manipulating biomolecular sequence information, the database including genomic libraries for a plurality of types of organisms, the libraries having multiple genomic sequences, at least some of which represent open reading frames located along a contiguous sequence on each the plurality of organisms' genomes, and a user interface capable of receiving a selection of two or more of the genomic libraries for comparison and displaying the results of the comparison. The system also provides a user interface capable of receiving a selection of one or more probe open reading frames for use in determining homologous matches between such probe open reading frame(s) and the open reading frames in the genomic libraries, and displaying the results of the determination.

US Patent:

59705000, Oct 19, 1999

Filed:

May 15, 1997

Appl. No.:

8/856647

Inventors:

Cathryn E. Sabatini - San Jose CA
Joe Don Heath - Sunnyvale CA
Peter A. Covitz - San Francisco CA
Tod M. Klinger - Palo Alto CA
Frank D. Russo - Redwood City CA
Stephanie F. Berry - Fremont CA

Assignee:

Incyte Pharmaceuticals, Inc. - Palo Alto CA

International Classification:

G06F 1730

US Classification:

707104

Abstract:

Disclosed is a relational database system for storing and displaying genetic information. Associated with the database is a software system allows a user to determine the relative position of a selected gene sequence within a genome. The system allows execution of a method of displaying the genetic locus of a biomolecular sequence. The method involves providing a database including multiple biomolecular sequences, at least some of which represent open reading frames located along a contiguous sequence on an organism's genome. An open reading frame for the sequence is selected and displayed together with adjacent open reading frames located upstream and downstream in the relative positions in which they occur on the contiguous sequence.