Sarah E Garcia

US Patent:

20220275445, Sep 1, 2022

Filed:

May 13, 2022

Appl. No.:

17/744205

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/6874
G16B 20/00
G16B 30/00
G16B 99/00
G16B 20/10
G16B 20/20
G16B 35/10
C12Q 1/6806

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.

US Patent:

20230089500, Mar 23, 2023

Filed:

Nov 23, 2022

Appl. No.:

18/058376

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/6874
G16B 20/00
G16B 30/00
G16B 99/00
G16B 20/10
G16B 20/20
G16B 35/10
C12Q 1/6806

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.

US Patent:

20210294810, Sep 23, 2021

Filed:

Dec 1, 2020

Appl. No.:

17/108372

Inventors:

- Menlo Park CA, US
Sarah K. GARCIA - Palo Alto CA, US
Richard CHEN - Burlingame CA, US
Michael James CLARK - Foster City CA, US

International Classification:

G06F 16/2457
G06F 16/248
G16B 20/00
G16B 50/00
G16B 50/10
G16B 20/20

Abstract:

The disclosure provides methods and systems for analyzing genotype data. In some embodiments, a computer-implemented method comprises receiving data relating to one or more phenotypes of a subject or family members thereof, and ranking genes based on their association score with one or more phenotypes. Next, an output of the data is generated, the output comprising a comparison of the data based on the association score. The comparison can be in at least one of numeric and graphic form.

US Patent:

20210238677, Aug 5, 2021

Filed:

Apr 20, 2021

Appl. No.:

17/235776

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/6874
G16B 20/00
G16B 30/00
G16B 99/00
C12Q 1/6806

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.

US Patent:

20210062258, Mar 4, 2021

Filed:

Oct 23, 2020

Appl. No.:

17/078857

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/6874
G16B 20/00
G16B 30/00
G16B 99/00
C12Q 1/6806

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.

US Patent:

20210047687, Feb 18, 2021

Filed:

Oct 26, 2020

Appl. No.:

17/080474

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/6874
G16B 20/00
G16B 30/00
G16B 99/00
C12Q 1/6806

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.

US Patent:

20180327834, Nov 15, 2018

Filed:

Jun 1, 2018

Appl. No.:

15/996215

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/6874
C12Q 1/6806
G06F 19/22

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.

US Patent:

20160362743, Dec 15, 2016

Filed:

Jul 28, 2016

Appl. No.:

15/222875

Inventors:

- Menlo Park CA, US
Gemma Chandratillake - Cambridge, GB
Richard Chen - Burlingame CA, US
Sarah Garcia - Palo Alto CA, US
Hugo Yu Kor Lam - Sunnyvale CA, US
Shujun Luo - Castro Valley CA, US
Mark R. Pratt - Roseburg OR, US
John West - Cupertino CA, US

International Classification:

C12Q 1/68
G06F 19/22
G06F 19/18

Abstract:

This disclosure provides systems and methods for sample processing and data analysis. Sample processing may include nucleic acid sample processing and subsequent sequencing. Some or all of a nucleic acid sample may be sequenced to provide sequence information, which may be stored or otherwise maintained in an electronic storage location. The sequence information may be analyzed with the aid of a computer processor, and the analyzed sequence information may be stored in an electronic storage location that may include a pool or collection of sequence information and analyzed sequence information generated from the nucleic acid sample. Methods and systems of the present disclosure can be used, for example, for the analysis of a nucleic acid sample, for producing one or more libraries, and for producing biomedical reports. Methods and systems of the disclosure can aid in the diagnosis, monitoring, treatment, and prevention of one or more diseases and conditions.