Christopher Michael Silva

US Patent:

6456734, Sep 24, 2002

Filed:

Jun 5, 1998

Appl. No.:

09/092316

Inventors:

Douglas C. Youvan - San Jose CA
Christopher M. Silva - Sunnyvale CA
Edward J. Bylina - San Jose CA
William J. Coleman - Moutain View CA
Michael R. Dilworth - Santa Cruz CA
Mary M. Yang - San Jose CA

Assignee:

Kairos Scientific, Inc. - San Diego CA

International Classification:

G06K 900

US Classification:

382128, 382100, 382132, 382133

Abstract:

Imaging hardware, software, calibrants, and methods are provided to visualize and quantitate the amount of Fluorescence Resonance Energy Transfer (FRET) occurring between donor and acceptor molecules in epifluorescence microscopy. The MicroFRET system compensates for overlap among donor, acceptor, and FRET spectra using well characterized fluorescent beads as standards in conjunction with radiometrically calibrated image processing techniques. The MicroFRET system also provides precisely machined epifluorescence cubes to maintain proper image registration as the sample is illuminated at the donor and acceptor excitation wavelengths. Algorithms are described that pseudocolor the image to display pixels exhibiting radiometrically-corrected fluorescence emission from the donor (blue), the acceptor (green) and FRET (red). The method is demonstrated on samples exhibiting FRET between genetically engineered derivatives of the Green Fluorescent Protein (GFP) bound to the surface of Ni chelating beads by histidine-tags.

US Patent:

6738502, May 18, 2004

Filed:

Jun 2, 2000

Appl. No.:

09/585951

Inventors:

William Coleman - Mountain View CA
Michael A. Tanner - Hayward CA
Christopher M. Silva - Sunnyvale CA
Edward Bylina - San Jose CA
Steven J. Robles - San Jose CA
Michael R. Dilworth - Santa Cruz CA
Douglas C. Youvan - San Jose CA
Mary M. Yang - San Jose CA

Assignee:

Kairos Scientific, Inc. - San Diego CA

International Classification:

G06K 900

US Classification:

382133, 382167, 382191, 382287

Abstract:

The present invention provides an instrument and methods for a multispectral optical technique that can simultaneously classify individual biological cells within mixed populations. This invention, known as Multispectral Taxonomic Identification (MTID), shows that microscopy can be combined with a software analysis program to measure and categorize the fluorescence and other spectroscopically identifiable signals from complex populations of cells in situ, without cultivation. The invention thus enables high-throughput screening of cells for taxonomic classification.

US Patent:

8445642, May 21, 2013

Filed:

Oct 14, 2008

Appl. No.:

12/251456

Inventors:

Bruce C. Onisko - Kensington CA, US
Christopher J. Silva - Albany CA, US
Jesus R. Requena - Briom, ES
John Mark Carter - Richmond CA, US

Assignee:

The United States of America as Represented by the Secretary of Agriculture - Washington DC

International Classification:

C07K 16/00
C07K 16/06
C07K 16/18

US Classification:

5303871, 5303881, 435 2, 4241841

Abstract:

The invention is directed to methods to distinguish among different protein conformers of the same protein such as proteins which form amyloid deposits. Using the methods of the invention, one or more protein conformers in a sample can be detected, differentiated, and quantitated. An example of a protein which is known to exist in at least two conformations is the normal prion protein (PrP) and its infectious isoform (PrP). The invention provides means to distinguish PrPfrom PrPand allows quantitation of each individually, even when the conformers are present together in a mixture. Thus, the methods of the invention can provide important tools for human and animal health.

US Patent:

20060110785, May 25, 2006

Filed:

Oct 13, 2005

Appl. No.:

11/249216

Inventors:

Bruce Onisko - Kensington CA, US
Christopher Silva - Albany CA, US
Jesus Requena - Briom, ES

Assignee:

The U.S.A. as rep. by the Secretary of Agriculture - Washington DC
Universidade De Santiago De Compostela - Santiago de Compostela

International Classification:

C12Q 1/37
G06F 19/00

US Classification:

435023000, 702019000

Abstract:

The invention is directed to methods to distinguish among different protein conformers of the same protein such as proteins which form amyloid deposits. Using the methods of the invention, one or more protein conformers in a sample can be detected, differentiated, and quantitated. An example of a protein which is known to exist in at least two conformations is the normal prion protein (PrP) and its infectious isoform (PrP). The invention provides means to distinguish PrPfrom PrPand allows quantitation of each individually, even when the conformers are present together in a mixture. Thus, the methods of the invention can provide important tools for human and animal health.

US Patent:

59142456, Jun 22, 1999

Filed:

Jun 16, 1998

Appl. No.:

9/098202

Inventors:

Edward J. Bylina - San Jose CA
William J. Coleman - Mountain View CA
Michael R. Dilworth - Santa Cruz CA
Christopher M. Silva - Sunnyvale CA
Mary M. Yang - San Jose CA
Douglas C. Youvan - San Jose CA

Assignee:

Kairos Scientific Inc. - Santa Clara CA

International Classification:

C12Q 144
C12Q 137
C12Q 154
C12Q 100

US Classification:

435 19

Abstract:

A MicroColonyImager instrument and solid phase methods to screen cells expressing mutagenized enzymes for enhanced activity. The MicroColonyImager instrument and methods permit high throughput screening of enzyme libraries by time course analyses of single-pixels, using either absorption, fluorescence or FRET. This high throughput assay can detect small differences in enzyme rates within microcolonies grown at a nearly confluent density on an assay disk. Each microcolony is analyzed simultaneously at single-pixel resolution, requiring less than 100 ml substrate/measurement. By simultaneously assaying different substrates tagged with spectrally distinct chromogenic or fluorogenic reporters, the substrate specificity of an enzyme can be changed.