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THE REGENTS OF THE UNIVERSITY OF CALIFORNIA - Oakland CA
International Classification:
G06F 17/30
US Classification:
707740, 707E17089
Abstract:
A computational method and system for the comparison and analysis of different objects of information within a database or collection. All objects are compared in a pair-wise fashion so the relative similarity between each object to every other object in the collection is known. A generalized alignment-free method is described for comparing whole genome (coding and non-coding) DNA sequences is used to investigate the relationship among placental mammalian genomes. Differences in word feature frequency profiles (FFP) are used to derive distance and infer evolutionary relationships.