Skills:
Programming Languages: Java, C/C++, Cuda C, Python, Perl, Visual Basic, JDBC, JSP, Servlet, PHP, HTML, XML, XSL, Shell scripts, and R. Software: Eclipse, Visual Studio, Microsoft Office Suite, SEQUEST, Xcalibur, Decon2LS, DeconMSN, SAMtools, TopHat/Bowtie. Systems: Windows XP, Linux (Red Hat, Debian, Ubuntu), UNIX, MAC O.S. Databases: PostgreSQL, MySQL, SQLite, MS SQL Server, Oracle. Other: Website development software (Drupal, Tripal, Plone), Subversion, Integrated Change Management and Version Control Sablime, MGTS (Lucent Technologies software product), SGE, Maui scheduler, XCAT, PBS. Sequence Analysis: Geneious, IGB, BLAST, Misa, Primer3 Biological Databases: NCBI, Swiss-Prot, GEO, GO, KEGG Genome Browsers: UCSC Genome Browser, Integrated Genome Browser, GBrowse