The present invention relates to a human cDNA encoding a methionine aminopeptidase type-3 (MetAP-3) protein. The invention also relates to nucleic acid molecules associated with or derived from this cDNA including complements, homologues and fragments thereof, and methods of using these nucleic acid molecules, to generate, for example, polypeptides and fragments thereof. The invention also provides methods of using the nucleic acids, for example, to produce a protein and fragments thereof and to screen for compounds or compositions that preferentially or specifically effect the activity of a MetAP-3 protein.
Carolyn J. Sympson - Ballwin MO, US Rajeev Aurora - Glencoe MO, US Stanton B. Dotson - Chesterfield MO, US Ronald B. Frazier - Lake St. Louis MO, US Cynthia L. Woods - St. Peters MO, US Hamideh Zakeri - Chesterfield MO, US Xianzhi Zhou - Chesterfield MO, US
Methionine aminopeptidases catalyse the co-translational removal of amino terminal methionine residues from nascent polypeptide chains. A newly-discovered enzyme, designated methionine aminopeptidase type-3 (MetAP-3), has a substrate specificity which is similar to MetAP-1 and MetAP-2, although it is not inhibited by fumagillin, an irreversible inhibitor of MetAP-2. MetAP-3 also preferentially localizes to mitochondria, unlike MetAP-1 and MetAP-2, which accumulate in the cytoplasm. One embodiment of the present invention relates to human cDNAs encoding polypeptides comprising MetAP-3. Other embodiments of the invention relate to nucleic acid molecules derived from these cDNAs, including complements, homologues, and fragments thereof, and methods of using these nucleic acid molecules, to generate polypeptides and fragments thereof. Other embodiments of the invention relate to antibodies directed against polypeptides comprising MetAP-3, and methods to screen for compounds or compositions that preferentially or specifically effect the activity of polypeptides comprising MetAP-3.
Sherin Abdel-Meguid - Exton PA, US Rajeev Aurora - Chesterfield MO, US Preston Hensley - Chester Springs PA, US George Rose - Glen Arm MD, US Peter Young - Lawrenceville NJ, US Yuan Zhu - Blue Bell PA, US
2-19 polypeptides and polynucleotides and methods for producing such polypeptides by recombinant techniques are disclosed. Also disclosed are methods for utilizing 2-19 polypeptides and polynucleotides in therapy, and diagnostic assays for such.
Sequence Covariance Networks, Methods And Uses Therefor
Rajeev Aurora - Wildwood MO, US Maureen J. Donlin - Kirkwood MO, US John E. Tavis - Kirkwood MO, US
Assignee:
Saint Louis University - St. Louis MO
International Classification:
C12Q 1/70 C12Q 1/00 C12Q 1/68 G01N 33/53
US Classification:
435 5, 435 6, 435 4, 435 71
Abstract:
Methods of identifying targets for designing a therapeutic agent are disclosed. These methods comprise: determining an amino acid sequence of one or more polypeptides of each isolate of a plurality of isolates of a biological system; identifying covariance pairs of amino acid residues; establishing a network comprising the covariance pairs; and identifying one or more hub residue positions, wherein a hub residue position comprises a target for designing a therapeutic agent if the hub residue position has a rank order in the 40percentile or greater. In other aspects, methods are disclosed for selecting a therapy for an infectious disorder. In various configurations, these methods comprise: determining amino acids occupying a plurality of diagnostic amino acid residue positions comprised by one or more polypeptides encoded by an infectious agent infecting a subject; and assigning the infectious agent infecting the subject to one covariance network selected from a plurality of covariance networks, wherein each network comprises a unique rank order of hubs with respect to the other networks, and whereby the therapy is selected on the basis of the covariance network assignment.
Network Threading Approach For Predicting A Patient's Response To Hepatitis C Virus Therapy
Rajeev Aurora - Wildwood MO, US John Tavis - Kirkwood MO, US
Assignee:
ST. LOUIS UNIVERSITY - St. Louis MO
International Classification:
G06F 19/24
US Classification:
702 19
Abstract:
The present invention generally relates to a computer-implemented method for predicting a response of a virus to antiviral therapy, and finds particular use in predicting a response of a Hepatitis C or Hepatitis B virus isolated from a patient.
Generalized Network Threading Approach For Predicting A Subject's Response To Hepatitis C Virus Therapy
Rajeev Aurora - Wildwood MO, US Shelley D. Minteer - Salt Lake City UT, US
International Classification:
C12P 7/16 G01N 21/64 C12P 7/40
US Classification:
435136, 435160, 436 94
Abstract:
Disclosed are methods for detecting cellulose in cellulosic materials and producing alcohol using cellulosic materials. More particularly, disclosed are methods for producing alcohol in a cell-free system by contacting pyruvate with enzymes from a minimal enzymatic pathway. Also disclosed are methods of producing pyruvate by culturing a microorganism under hypoxic conditions. Disclosed are methods for detecting cellulose in a sample using Congo red dye.
Sherin S Abdel-Meguid - Exton PA Rajeev Aurora - Chesterfield MO Derk J Bergsma - Berwyn PA Catherine E Ellis - Glassboro NJ Stephanie F Guerrera - Philadelphia PA Preston Hensley - Chester Springs PA Jeffrey L Mooney - Limerick PA George D Rose - Glen Arm MD Peter R Young - Lawrenceville NJ Yuan Zhu - Blue Bell PA
Assignee:
SmithKline Beecham Corporation - Philadelphia PA
International Classification:
C12N 121
US Classification:
4352523
Abstract:
EF-7 polypeptides and polynucleotides and methods for producing such polypeptides by recombinant techniques are disclosed. Also disclosed are methods for utilizing EF-7 polypeptides and polynucleotides in therapy, and diagnostic assays for such.
Saint Louis University
Associate Professor
Cold Spring Harbor Laboratory 1998 - 2003
Graduate Student
Pfizer 1998 - 2003
Associate Director
Chemsolve Jul 1, 1977 - Jul 1, 1979
Senior Scientist
Education:
The Johns Hopkins University School of Medicine 1994 - 1998
Washington University School of Medicine In St. Louis 1992 - 1994
Cold Spring Harbor Laboratory 1988 - 1992
Doctorates, Doctor of Philosophy, Molecular Biology
Stony Brook University 1986 - 1992
Doctorates, Doctor of Philosophy, Molecular Biology
Rutgers University - Newark 1977 - 1981
Bachelors, Bachelor of Arts, Biology, Chemistry
The Johns Hopkins University
Rutgers, the State University of New Jersey - Newark
Skills:
Systems Biology Genomics Biochemistry Molecular Biology Proteomics Protein Purification Cell Culture Assay Development Computational Biology Transcriptomics Metabolomics Bioinformatics Biomarkers Cell Biology Genetics Protein Expression Dna